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Direct lysis qPCR reagents for single-cell and low-input analysis

AnyGenes® DiLysis™ reagents are designed to support direct lysis qPCR workflows, helping researchers prepare cell lysates for downstream RT-qPCR and targeted gene expression analysis without conventional RNA extraction.

This extraction-free workflow is particularly useful when working with single-cell samples, rare cell populations, limited biological material or low-input experiments where sample handling and RNA loss must be carefully controlled.

Direct lysis qPCR Extraction-free workflow Single-cell RT-qPCR Low-input samples
AnyGenes DiLysis direct lysis qPCR reagents for single-cell RT-qPCR and low-input gene expression analysis

DiLysis™ direct lysis qPCR reagents at a glance

DiLysis™ supports extraction-free preparation of cell lysates before RT-qPCR, helping simplify workflows for rare cells, small cell populations and low-input gene expression analysis.

Extraction-free workflow

Designed to lyse cells directly and reduce the need for conventional RNA extraction steps before RT-qPCR analysis.

Low cell number applications

Can support workflows involving limited biological material, including applications using approximately 10–100 cells depending on sample type and experimental design.

Reduced sample handling

Helps minimize manipulation steps that can contribute to RNA loss, variability or contamination in low-input workflows.

RT-qPCR compatible

Cell lysates can be used in adapted reverse transcription and qPCR workflows for targeted gene expression analysis.

Compatible with SpeAmp®

Can be combined with SpeAmp® cDNA preamplification when target abundance or sample input is limited.

SignArrays® workflows

Supports targeted pathway-focused qPCR strategies when combined with suitable preamplification and SignArrays® panels.

How direct lysis qPCR simplifies single-cell workflows

Conventional RNA extraction can be challenging when starting material is very limited. Multiple handling steps may increase sample loss, introduce variability or make it difficult to work with rare cells, sorted populations or small biological samples.

DiLysis™ supports a simplified direct lysis qPCR workflow by preparing cell lysates that can be used for reverse transcription and downstream targeted qPCR analysis. This approach helps streamline sample preparation while keeping the workflow focused on selected genes, pathways or biomarker panels.

1. Cell collection

Cells are isolated, sorted or collected according to the biological question and sample type.

2. Direct lysis with DiLysis™

Cells are lysed directly using DiLysis™ reagents, reducing handling before reverse transcription.

3. RT-qPCR analysis

Lysates are processed through adapted reverse transcription, optional SpeAmp® preamplification and targeted qPCR analysis.

Direct lysis performance depends on cell type, sample handling, input level, RNA stability, reverse transcription efficiency, assay design and downstream qPCR conditions.

Direct lysis qPCR workflow and validation data

DiLysis™ supports extraction-free RT-qPCR workflows for low-input samples and targeted gene expression analysis. The workflow below illustrates how direct lysis can be combined with reverse transcription, SpeAmp® cDNA preamplification, qPCR SignArrays® and data analysis.

Workflow showing DiLysis direct lysis reverse transcription SpeAmp cDNA preamplification qPCR SignArrays and data analysis
Direct lysis workflow combining DiLysis™, reverse transcription, SpeAmp® cDNA preamplification, qPCR SignArrays® and downstream data analysis.

Low cell number performance

Performance graph of DiLysis kit showing Cq values according to log cell number with strong linear correlation
Selected validation data showing a linear relationship between Cq values and cell number in a DiLysis™ workflow.
Validation highlight: R² = 0.994 in selected low cell number experiments.

What this validation supports

The selected validation data support the use of DiLysis™ in low cell number workflows where direct sample preparation is required before RT-qPCR analysis.

  • supports workflows involving limited biological material;
  • helps reduce sample handling before reverse transcription;
  • can be combined with SpeAmp® preamplification for low-input qPCR;
  • supports downstream SignArrays® pathway-focused analysis.
Performance depends on cell type, sample handling, RNA stability, reverse transcription efficiency, assay design, target abundance and downstream qPCR conditions.

Key benefits of DiLysis™ direct lysis reagents

DiLysis™ reagents are designed to simplify sample preparation before RT-qPCR, especially when working with limited cellular material.

Streamlined preparation

Reduces extraction-related steps before reverse transcription and qPCR analysis.

Lower handling burden

Helps limit manual manipulation, which is important in low cell number experiments.

Adapted to rare samples

Suitable for workflows involving single-cell material, rare cells or small cell populations.

Combine direct lysis with targeted qPCR preamplification

For very low-input samples or weakly expressed targets, DiLysis™ can be combined with SpeAmp® cDNA preamplification before downstream qPCR or SignArrays® analysis.

Direct lysis

DiLysis™ prepares lysates from limited cellular material without conventional RNA extraction.

SpeAmp® preamplification

SpeAmp® supports targeted cDNA preamplification when input material or target abundance is limited.

SignArrays® analysis

Selected targets can then be analyzed using qPCR assays or pathway-focused SignArrays® panels.

Applications of direct lysis qPCR reagents

DiLysis™ reagents support low-input RT-qPCR workflows where sample quantity, cell number or sample preparation time can limit conventional RNA extraction.

Single-cell RT-qPCR

Supports targeted gene expression analysis from individual cells or very small cell groups.

Rare cell populations

Useful for sorted cells, enriched populations or limited biological material.

Low-input gene expression

Helps prepare samples for targeted RT-qPCR when RNA input is limited.

Signaling pathway analysis

Can support pathway-focused workflows when combined with SpeAmp® and SignArrays® panels.

Biomarker research

Supports targeted analysis of selected biomarkers in limited or rare sample contexts.

RNA-seq validation

Can support targeted qPCR follow-up of selected transcriptomic results when remaining material is limited.

Scientific context for direct lysis and low-input RT-qPCR

Direct lysis and low-input RT-qPCR approaches have been described in peer-reviewed scientific literature for single-cell and small-sample gene expression workflows. These studies illustrate the relevance of reducing sample handling and adapting reverse transcription, preamplification and qPCR conditions when working with limited cellular material.

Direct cell lysis for single-cell profiling

This study describes direct cell lysis as an approach for single-cell gene expression profiling by real-time PCR, highlighting the importance of RNA accessibility, RNA integrity and compatibility with downstream enzymatic reactions.

Direct lysis for low cell numbers

This Scientific Reports article evaluates optimized direct lysis methods for gene expression studies using low cell numbers, a context closely aligned with low-input RT-qPCR workflows.

Guidelines for single-cell RT-qPCR

This tutorial reviews key steps in single-cell RT-qPCR workflows, including cell collection, lysis, reverse transcription, preamplification, qPCR and data analysis.

Direct lysis qPCR reagent catalog

DiLysis™ reagents are available in different reaction formats. Contact AnyGenes® for quotations, product information, distributor details or technical guidance.

Catalog Reference Number of Reactions Price
DiLysisTM -10
10
***
DiLysisTM -25
25
***
DiLysisTM -50
50
***

Need support with a direct lysis qPCR workflow?

AnyGenes® can help you define the most appropriate direct lysis, reverse transcription, preamplification and qPCR strategy according to your cell type, input level, target genes and downstream analysis.

Whether your project involves single-cell analysis, rare cells, low-input samples, pathway profiling or biomarker validation, our team can help you build a targeted workflow.

Frequently asked questions about direct lysis qPCR

What are direct lysis qPCR reagents used for?

Direct lysis qPCR reagents are used to lyse cells directly before RT-qPCR, reducing or eliminating conventional RNA extraction steps in adapted gene expression workflows.

Can DiLysis™ reagents be used for single-cell RT-qPCR?

Yes. DiLysis™ reagents can support single-cell and low cell number RT-qPCR workflows, including applications involving approximately 10–100 cells depending on sample type, target abundance and experimental design.

Why use direct lysis instead of RNA extraction?

Direct lysis can simplify sample preparation, reduce handling steps and help limit RNA loss, which is especially important when starting material is rare or limited.

Can direct lysis be combined with qPCR preamplification?

Yes. DiLysis™ can be combined with SpeAmp® cDNA preamplification when RNA input is limited or when selected target genes are weakly expressed.

Are DiLysis™ reagents compatible with SignArrays®?

DiLysis™ can be integrated into workflows using SpeAmp® preamplification and SignArrays® qPCR panels for targeted gene expression and pathway-focused analysis.

Can AnyGenes® help optimize a direct lysis qPCR workflow?

Yes. AnyGenes® can help adapt the workflow according to cell type, sample input, reverse transcription strategy, preamplification needs, target genes and qPCR conditions.

Need more technical answers?

Visit the AnyGenes® Help & FAQ section for detailed information about our products, services, ordering process and technical support.

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